RnoEX6019883 @ rn6
Exon Skipping
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151135610-151136306:+
Coord C1 exon
chr3:151135610-151135728
Coord A exon
chr3:151135822-151135971
Coord C2 exon
chr3:151136136-151136306
Length
150 bp
Sequences
Splice sites
3' ss Seq
CCGCCTTCCTGCATCCACAGGTG
3' ss Score
10.74
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTGCCGACAAGGCTGCCTACCTGATGGGAGTCAGCAGTGGAGACCTCCTCAAAGGTCTTCTGCACCCCCGGGTTCGTGTGGGAAACGAGTATGTGACCAAGGGCCAGAGTGTGGAGCAG
Seq A exon
GTGGTATTTGCTGTGGGGGCCCTGGCCAAGGCTACCTATGACCGGTTGTTCCGATGGCTGGTATCTCGAATCAATCAGACCCTGGACACAAAGCTCCCCCGTCAGTTCTTCATTGGGGTCCTGGATATCGCTGGTTTTGAGATCTTTGAG
Seq C2 exon
TTTAACAGCTTCGAGCAACTGTGTATCAACTTCACCAACGAGAAACTGCAGCAGTTCTTCAACCAGCACATGTTCGTGCTGGAGCAGGAGGAGTACAAACGGGAGGGCATTGACTGGGTCTTCATCGACTTCGGCCTTGACCTGCAGCCCTGCATCGACCTCATCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
PF0006316=Myosin_head=FE(7.1=100)
C2:
PF0006316=Myosin_head=FE(8.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACCTGATGGGAGTCAGCA
R:
GTCAAGGCCGAAGTCGATGAA
Band lengths:
245-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]