BtaEX0023436 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018399 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr1:53636411-53642612:-
Coord C1 exon
chr1:53642494-53642612
Coord A exon
chr1:53637169-53637318
Coord C2 exon
chr1:53636411-53636581
Length
150 bp
Sequences
Splice sites
3' ss Seq
ACTTTTGATGTGGTTTTCAGGTG
3' ss Score
9.73
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATGCTGGCAAGGCTGCTTTCCTCATGGGCATTAACTCCTCTGAGCTGGTGAAGGGCTTGATCCATCCTAGAATCAAAGTTGGTAATGAATATGTTACTAGAAGTCAAAATGTAGAACAG
Seq A exon
GTGACCTATGCTGTTGGTGCCTTGTCTAAGTCAATCTATGAGAGAATGTTTAAGTGGCTGGTGGCACGTATCAACAGGGTCCTGGATGCCAAGCTGTCAAGACAATTCTTCATTGGCATTCTTGACATCACTGGTTTTGAGATGCTTGAT
Seq C2 exon
TATAACAGTCTTGAACAACTTTGCATTAATTTTACCAATGAAAAGTTACAACAGTTCTTCAATCAGCATACGTTGGTTTTGGAGCAAGAGGAATATAGGAGAGAAGGCATTGACTGGGTGTCCATCGACTTTGGCCTGGATTTGCAAGCCTGTGTGGATCTTGTTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018399-'13-13,'13-12,14-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.8=100)
A:
PF0006316=Myosin_head=FE(7.2=100)
C2:
PF0006316=Myosin_head=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGGTGAAGGGCTTGATC
R:
ACAAGATCCACACAGGCTTGC
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development