MmuEX6062755 @ mm9
Exon Skipping
Gene
ENSMUSG00000092009 | AC122233.1
Description
myosin, heavy chain 15 [Source:MGI Symbol;Acc:MGI:3643515]
Coordinates
chr16:49096543-49101756:+
Coord C1 exon
chr16:49096543-49096661
Coord A exon
chr16:49100193-49100342
Coord C2 exon
chr16:49101586-49101756
Length
150 bp
Sequences
Splice sites
3' ss Seq
CAATTAACTATGATTTCTAGGTA
3' ss Score
5.11
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATGCTGACAAAGCTGCTTTCCTCATGGGAATTCACGCTTCTGAGTTGTTAAAAGGCCTAATATATCCTAGAATCAAAGTTGGTAATGAATATGTTACCAGAAGTCAAAACCTACAACAG
Seq A exon
GTAACCTATGCAGTCGGTGCACTGTCTCAGTCAATATATGAGAGGATGTTTCAGTGGCTAGTGGCACGCATGAACCAAGTCCTGGACGCCAAGCTGACAAGTCACTTCTTCGTTGGGATTCTTGACACCACTGGTTTTGAAATACTTGAT
Seq C2 exon
TATAATAGTCTTGAGCAACTCTGCATCAATTTTACCAATGAAAAGTTACAACAGTTTTTCAATCAGCAACTGTTTATTCTGGAGCAAGAAGAATACAGGAAAGAGGGCCTTGACTGGCTGTCCATTGACTATGGTCTGGATGTGCAAGCCTGCATAGATTTCATTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000092009-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.8=100)
A:
PF0006316=Myosin_head=FE(7.3=100)
C2:
PF0006316=Myosin_head=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCATGGGAATTCACGCTT
R:
GGCTTGCACATCCAGACCATA
Band lengths:
251-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: