RnoEX6056894 @ rn6
Exon Skipping
Gene
ENSRNOG00000061038 | Myh15
Description
myosin, heavy chain 15 [Source:RGD Symbol;Acc:1565858]
Coordinates
chr11:54301026-54308001:-
Coord C1 exon
chr11:54307883-54308001
Coord A exon
chr11:54302063-54302212
Coord C2 exon
chr11:54301026-54301196
Length
150 bp
Sequences
Splice sites
3' ss Seq
AATTTACATATGATTTCTAGGTA
3' ss Score
5.58
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATGCTGACAAAGCTGCCTTACTCATGGGCATTAATGCTTCTGAGTTGTTGAAAGGTCTTATATATCCTAGAATCAAAGTTGGTAATGAATATGTTACCAGAAGTCAAAACATACAACAG
Seq A exon
GTAACCTATGCAGTTGGTGCACTCTCTAAGTCAATATATGAGAGGATGTTTAAGTGGCTAGTGGCACGCATGAACCAGGTCCTGGATGCCAAGGTGACAAGCCACTTCTTCATTGGTATTCTTGACATCACTGGTTTTGAAATACTTGAT
Seq C2 exon
TACAATAGTCTCGAGCAACTCTGCATCAACTTTACCAATGAAAAGTTACAACAGTTTTTCAATCAGCAACTGTTTGTTCTGGAGCAAGAAGAATGCAGGAAAGAAGGCCTTGACTGGATGTCCATTGACTATGGTCTGGATTTGCAAGCCTGCATCGATCTCATTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061038-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.8=100)
A:
PF0006316=Myosin_head=FE(7.3=100)
C2:
PF0006316=Myosin_head=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCTTACTCATGGGCATT
R:
GGCTTGCAAATCCAGACCATAGT
Band lengths:
258-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]