HsaEX6058456 @ hg19
Exon Skipping
Gene
ENSG00000172752 | COL29A1
Description
collagen, type VI, alpha 5 [Source:HGNC Symbol;Acc:26674]
Coordinates
chr3:130124837-130125165:+
Coord C1 exon
chr3:130124837-130124863
Coord A exon
chr3:130124975-130125019
Coord C2 exon
chr3:130125112-130125165
Length
45 bp
Sequences
Splice sites
3' ss Seq
TGTCTATTGTCATCTCTCAGGGA
3' ss Score
9.56
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GGACTCAAAGGATTTTCTGGACCTAAG
Seq A exon
GGAGGTCATGGAGACGATGGGATTGATGGACTTGATGGGGAAGAG
Seq C2 exon
GGCTGTCATGGATTTCCTGGAATAAAAGGAGAAAAAGGTGATCCAGGATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172752-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(1.6=11.1),PF0139113=Collagen=FE(9.1=100)
A:
PF0139113=Collagen=FE(19.7=100),PF0139113=Collagen=PU(18.3=73.3)
C2:
PF0139113=Collagen=FE(23.9=100),PF0139113=Collagen=FE(28.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTCAAAGGATTTTCTGGACCT
R:
ATCCTGGATCACCTTTTTCTCCT
Band lengths:
76-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)