MmuEX6068402 @ mm10
Exon Skipping
Gene
ENSMUSG00000091345 | Col6a5
Description
collagen, type VI, alpha 5 [Source:MGI Symbol;Acc:MGI:3648134]
Coordinates
chr9:105914994-105915339:-
Coord C1 exon
chr9:105915313-105915339
Coord A exon
chr9:105915139-105915183
Coord C2 exon
chr9:105914994-105915047
Length
45 bp
Sequences
Splice sites
3' ss Seq
GACTTCTTGTCATCCCTTAGGGG
3' ss Score
8.79
5' ss Seq
GAAGTGAGC
5' ss Score
5.01
Exon sequences
Seq C1 exon
GGAGTCAAAGGATTTTCAGGAGCTCAG
Seq A exon
GGGGAACATGGAGAGGACGGGCTGGACGGACTGGATGGAGAAGAA
Seq C2 exon
GGATTTTACGGATTTCGTGGGGGAAAGGGACAAAAAGGTGACCCTGGCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091345-'20-19,'20-18,21-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(10.8=100)
A:
PF0139113=Collagen=FE(18.9=100),PF0139113=Collagen=PU(10.2=60.0)
C2:
PF0139113=Collagen=FE(23.0=100),PF0139113=Collagen=FE(19.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTCAAAGGATTTTCAGGAGCT
R:
CTGATTGCCAGGGTCACC
Band lengths:
81-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types