HsaEX6059811 @ hg19
Exon Skipping
Gene
ENSG00000178084 | HTR3C
Description
5-hydroxytryptamine (serotonin) receptor 3C, ionotropic [Source:HGNC Symbol;Acc:24003]
Coordinates
chr3:183777224-183778459:+
Coord C1 exon
chr3:183777224-183777428
Coord A exon
chr3:183777616-183777831
Coord C2 exon
chr3:183777938-183778459
Length
216 bp
Sequences
Splice sites
3' ss Seq
ATAATTTGCTCTGCCCTCAGGTG
3' ss Score
9.8
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GTGGCCATCAGGCGCAGGCCAAGCCTCTACATCATAAACCTGCTGGTGCCCAGTAGCTTTCTGGTTGCCATTGATGCCCTCAGCTTCTACCTGCCAGCAGAGAGCGAGAATCGTGCCCCATTCAAGATAACACTTCTGCTGGGCTACAACGTCTTCCTGCTCATGATGAATGACTTGCTCCCTGCCAGTGGCACCCCCCTCATCA
Seq A exon
GTGTCTACTTCGCCCTGTGCCTGTCCCTGATGGTGGTCAGCCTGCTGGAGACCGTCTTCATTACCTACCTGCTGCACGTGGCCACCACCCAGCCCCCACCCATGCCTAGGTGGCTTCACTCCCTGCTGCTCCACTGCACCAGCCCAGGGAGATGCTGTCCCACTGCGCCCCAGAAGGGAAATAAGGGCCTGGGTCTCACCCTCACCCACCTGCCTG
Seq C2 exon
GCCCAAAGGAGCCGGGGGAGTTAGCAGGGAAGAAGCTGGGACCCAGAGAGACCGAGCCAGATGGGGGCTCAGGATGGACAAAGACCCAGCTAATGGAGCTGTGGGTGCAGTTCAGCCACGCGATGGACACCCTGCTCTTCCGCCTCTACCTGCTCTTCATGGCCTCCTCCATCCTTACTGTCATTGTCCTCTGGAACACCTAGGCAGACATCCCCCCTCTCTGGCAAACAACAGCTTGGAGTTTCTGCTGGTCTTGGGCCAGCCGGACTCATTTTCCTAATCTTAGCCACTTATCCCCAGTGACTACCATGTCCCCTTCTAAATTCCAAAGACTCCAACGCAGCACTAGCAAGCAGGTTCGGGACAGCCCTGGACGATTTCCCGACCGCTGCTCAGGCTGCTCATTCCTGCTCACCCTCAGTCTCCCTGAGCTACCACCTAACTCCTCACTCCCTGATCAATGGAAGTCCAGGTCAGTGGAGTCTCTCCTTGATTGATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178084-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.041 C2=0.299
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PD(2.9=8.7),PF0293211=Neur_chan_memb=PU(47.0=79.7)
A:
PF0293211=Neur_chan_memb=PD(52.1=83.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACAACGTCTTCCTGCTC
R:
ACTCCAAGCTGTTGTTTGCCA
Band lengths:
306-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)