HsaEX6059811 @ hg38
Exon Skipping
Gene
ENSG00000178084 | HTR3C
Description
5-hydroxytryptamine receptor 3C [Source:HGNC Symbol;Acc:HGNC:24003]
Coordinates
chr3:184059436-184060671:+
Coord C1 exon
chr3:184059436-184059640
Coord A exon
chr3:184059828-184060043
Coord C2 exon
chr3:184060150-184060671
Length
216 bp
Sequences
Splice sites
3' ss Seq
ATAATTTGCTCTGCCCTCAGGTG
3' ss Score
9.8
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GTGGCCATCAGGCGCAGGCCAAGCCTCTACATCATAAACCTGCTGGTGCCCAGTAGCTTTCTGGTTGCCATTGATGCCCTCAGCTTCTACCTGCCAGCAGAGAGCGAGAATCGTGCCCCATTCAAGATAACACTTCTGCTGGGCTACAACGTCTTCCTGCTCATGATGAATGACTTGCTCCCTGCCAGTGGCACCCCCCTCATCA
Seq A exon
GTGTCTACTTCGCCCTGTGCCTGTCCCTGATGGTGGTCAGCCTGCTGGAGACCGTCTTCATTACCTACCTGCTGCACGTGGCCACCACCCAGCCCCCACCCATGCCTAGGTGGCTTCACTCCCTGCTGCTCCACTGCACCAGCCCAGGGAGATGCTGTCCCACTGCGCCCCAGAAGGGAAATAAGGGCCTGGGTCTCACCCTCACCCACCTGCCTG
Seq C2 exon
GCCCAAAGGAGCCGGGGGAGTTAGCAGGGAAGAAGCTGGGACCCAGAGAGACCGAGCCAGATGGGGGCTCAGGATGGACAAAGACCCAGCTAATGGAGCTGTGGGTGCAGTTCAGCCACGCGATGGACACCCTGCTCTTCCGCCTCTACCTGCTCTTCATGGCCTCCTCCATCCTTACTGTCATTGTCCTCTGGAACACCTAGGCAGACATCCCCCCTCTCTGGCAAACAACAGCTTGGAGTTTCTGCTGGTCTTGGGCCAGCCGGACTCATTTTCCTAATCTTAGCCACTTATCCCCAGTGACTACCATGTCCCCTTCTAAATTCCAAAGACTCCAACGCAGCACTAGCAAGCAGGTTCGGGACAGCCCTGGACGATTTCCCGACCGCTGCTCAGGCTGCTCATTCCTGCTCACCCTCAGTCTCCCTGAGCTACCACCTAACTCCTCACTCCCTGATCAATGGAAGTCCAGGTCAGTGGAGTCTCTCCTTGATTGATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178084_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.041 C2=0.299
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PD(2.9=8.7),PF0293211=Neur_chan_memb=PU(47.0=79.7)
A:
PF0293211=Neur_chan_memb=PD(52.1=83.6)
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACAACGTCTTCCTGCTC
R:
ACTCCAAGCTGTTGTTTGCCA
Band lengths:
306-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains