Special

HsaEX6059811 @ hg38

Exon Skipping

Gene
Description
5-hydroxytryptamine receptor 3C [Source:HGNC Symbol;Acc:HGNC:24003]
Coordinates
chr3:184059436-184060671:+
Coord C1 exon
chr3:184059436-184059640
Coord A exon
chr3:184059828-184060043
Coord C2 exon
chr3:184060150-184060671
Length
216 bp
Sequences
Splice sites
3' ss Seq
ATAATTTGCTCTGCCCTCAGGTG
3' ss Score
9.8
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GTGGCCATCAGGCGCAGGCCAAGCCTCTACATCATAAACCTGCTGGTGCCCAGTAGCTTTCTGGTTGCCATTGATGCCCTCAGCTTCTACCTGCCAGCAGAGAGCGAGAATCGTGCCCCATTCAAGATAACACTTCTGCTGGGCTACAACGTCTTCCTGCTCATGATGAATGACTTGCTCCCTGCCAGTGGCACCCCCCTCATCA
Seq A exon
GTGTCTACTTCGCCCTGTGCCTGTCCCTGATGGTGGTCAGCCTGCTGGAGACCGTCTTCATTACCTACCTGCTGCACGTGGCCACCACCCAGCCCCCACCCATGCCTAGGTGGCTTCACTCCCTGCTGCTCCACTGCACCAGCCCAGGGAGATGCTGTCCCACTGCGCCCCAGAAGGGAAATAAGGGCCTGGGTCTCACCCTCACCCACCTGCCTG
Seq C2 exon
GCCCAAAGGAGCCGGGGGAGTTAGCAGGGAAGAAGCTGGGACCCAGAGAGACCGAGCCAGATGGGGGCTCAGGATGGACAAAGACCCAGCTAATGGAGCTGTGGGTGCAGTTCAGCCACGCGATGGACACCCTGCTCTTCCGCCTCTACCTGCTCTTCATGGCCTCCTCCATCCTTACTGTCATTGTCCTCTGGAACACCTAGGCAGACATCCCCCCTCTCTGGCAAACAACAGCTTGGAGTTTCTGCTGGTCTTGGGCCAGCCGGACTCATTTTCCTAATCTTAGCCACTTATCCCCAGTGACTACCATGTCCCCTTCTAAATTCCAAAGACTCCAACGCAGCACTAGCAAGCAGGTTCGGGACAGCCCTGGACGATTTCCCGACCGCTGCTCAGGCTGCTCATTCCTGCTCACCCTCAGTCTCCCTGAGCTACCACCTAACTCCTCACTCCCTGATCAATGGAAGTCCAGGTCAGTGGAGTCTCTCCTTGATTGATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178084_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.041 C2=0.299
Domain overlap (PFAM):

C1:
PF0293118=Neur_chan_LBD=PD(2.9=8.7),PF0293211=Neur_chan_memb=PU(47.0=79.7)
A:
PF0293211=Neur_chan_memb=PD(52.1=83.6)
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
HIGH PSI
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACAACGTCTTCCTGCTC
R:
ACTCCAAGCTGTTGTTTGCCA
Band lengths:
306-522
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains