BtaEX6058200 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010791 | HTR3A
Description
Bos taurus 5-hydroxytryptamine (serotonin) receptor 3A (HTR3A), mRNA. [Source:RefSeq mRNA;Acc:NM_001193169]
Coordinates
chr15:24848874-24851695:+
Coord C1 exon
chr15:24848874-24849084
Coord A exon
chr15:24849187-24849408
Coord C2 exon
chr15:24851397-24851695
Length
222 bp
Sequences
Splice sites
3' ss Seq
CCCCGTCCCGGGGCGCATAGGTG
3' ss Score
4.23
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTGGTCATCCGCCGACGGCCCCTCTTCTATGCGGTCAGCCTGCTTCTGCCCAGTATCTTCCTCATGGTCGTGGACATTGTGGGCTTCTATCTGCCTCCAGACAGTGGTGAGAGAGTTTCCTTCAAGATCACGCTCCTCCTGGGCTACTCGGTCTTCCTGATCATCGTGTCCGACACGCTGCCTGCCACGGCCATCGGCACGCCGCTCATCG
Seq A exon
GTGTCTACTTTGTCGTGTGCATGGCTCTCCTGGTGATCAGCTTGGCCGAGACGATCCTCATTGTGCGGCTGGTACACAAACAGGACCTGCAGCAGCCGGTGCCCGCCTGGCTGCGCCACCTGGTTCTTGAGAGAGTCACCCTGCTCCTCTGCCTAGGGGACCAGTCGACAGCCCGGAGGCCCGCGGCCACCTCCCAGGCTGCCAAGACCGATGACTGCTCAG
Seq C2 exon
ACATGGGAAACCACTACAGCCATCTGGGGGGACCCCGGGACTTGGAGAAGACCCCGAGGGGCAGAGGCAGCCCTCCCCCGCCACCTCGGGAGGCCTCCCTGGCGGTGCGCGGGCTGCTGCAGGAGCTAACCTCCATCCGGCACTTCCTGGAAAAGCGGGAGGGGAGTCGAGAGGTGGCCCGGGACTGGCTGCGTGTGGGCTCCGTGCTGGACCGGCTGCTCTTCCGCATCTACCTACTGGCAGTGCTGGCCTACAGCATCACCCTGGTCACACTCTGGTCCATTTGGCAGTATTCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010791-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.107 C2=0.232
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PD(2.9=8.5),PF0293211=Neur_chan_memb=PU(25.8=80.3)
A:
PF0293211=Neur_chan_memb=FE(33.5=100)
C2:
PF0293211=Neur_chan_memb=PD(40.3=89.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGGTCGTGGACATTGTGG
R:
TTTTCCAGGAAGTGCCGGATG
Band lengths:
304-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]