RnoEX0042805 @ rn6
Exon Skipping
Gene
ENSRNOG00000006595 | Htr3a
Description
5-hydroxytryptamine receptor 3A [Source:RGD Symbol;Acc:61818]
Coordinates
chr8:53211438-53213602:-
Coord C1 exon
chr8:53213392-53213602
Coord A exon
chr8:53212719-53212940
Coord C2 exon
chr8:53211438-53212177
Length
222 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTTTCTCTGGCTCAGGTG
3' ss Score
10.11
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTGGTCATCCGCCGGCGGCCTTTATTCTACGCAGTCAGCCTCTTGCTGCCCAGTATCTTCCTCATGGTTGTGGACATTGTGGGCTTTTGTCTGCCCCCGGACAGTGGTGAGAGAGTGTCTTTCAAGATCACGCTCCTTCTGGGATACTCAGTCTTTCTCATCATCGTGTCAGACACACTGCCTGCAACGGCCATCGGCACTCCCCTCATTG
Seq A exon
GTGTCTACTTTGTAGTGTGCATGGCTCTGCTGGTGATAAGCCTCGCTGAGACCATCTTCATTGTGCAGCTGGTGCATAAGCAGGATTTACAGCGCCCTGTACCTGACTGGCTGAGGCACCTGGTCCTAGACAGAATAGCCTGGCTGCTCTGCCTAGGGGAGCAGCCCATGGCCCATAGGCCCCCAGCCACCTTCCAAGCCAACAAGACTGATGACTGCTCAG
Seq C2 exon
CCATGGGAAACCACTGCAGCCATGTCGGAAGCCCTCAGGACTTGGAGAAGACCTCGAGGAGCAGAGATAGCCCTCTTCCACCACCAAGGGAGGCCTCGCTGGCTGTGCGTGGCCTCTTGCAAGAGCTGTCCTCCATCCGCCACTCCCTGGAGAAGCGGGATGAGATGCGGGAGGTGGCAAGGGACTGGTTGCGGGTGGGATATGTGCTGGACAGGCTGCTGTTTCGCATCTACCTGCTGGCCGTGCTGGCTTACAGCATCACCCTGGTCACGCTCTGGTCCATTTGGCATTATTCCTGAGTGGGTACAGCCTGGCAGGGAGGGGATGTGAGTCCTGCATCCTGTTTCCAACACCAATTCATCTGAGCAACCCCAGTCCCCTTGTCCCCTAAACTTAGCACTGAAGACCCGGTCAGACCCCCCGACTTCGCTATCATGACTTTAAAGCATGATATCCTAGATCAAGAGGAACCAAGACTCCTCTAACTTATTAAGACATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006595_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.067 C2=0.172
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PD(2.9=8.5),PF0293211=Neur_chan_memb=PU(25.8=80.3)
A:
PF0293211=Neur_chan_memb=FE(33.5=100)
C2:
PF0293211=Neur_chan_memb=PD(40.3=89.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATCACGCTCCTTCTGGGA
R:
CAGCCTGTCCAGCACATATCC
Band lengths:
306-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]