HsaEX6004780 @ hg38
Exon Skipping
Gene
ENSG00000166736 | HTR3A
Description
5-hydroxytryptamine receptor 3A [Source:HGNC Symbol;Acc:HGNC:5297]
Coordinates
chr11:113986518-113990313:+
Coord C1 exon
chr11:113986518-113986728
Coord A exon
chr11:113986825-113987046
Coord C2 exon
chr11:113989465-113990313
Length
222 bp
Sequences
Splice sites
3' ss Seq
CTCTGCCCTGGGCTGCACAGGTG
3' ss Score
6.39
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTGGTCATCCGCCGGCGGCCCCTCTTCTATGTGGTCAGCCTGCTACTGCCCAGCATCTTCCTCATGGTCATGGACATCGTGGGCTTCTACCTGCCCCCCAACAGTGGCGAGAGGGTCTCTTTCAAGATTACACTCCTCCTGGGCTACTCGGTCTTCCTGATCATCGTTTCTGACACGCTGCCGGCCACTGCCATCGGCACTCCTCTCATTG
Seq A exon
GTGTCTACTTTGTGGTGTGCATGGCTCTGCTGGTGATAAGTTTGGCCGAGACCATCTTCATTGTGCGGCTGGTGCACAAGCAAGACCTGCAGCAGCCCGTGCCTGCTTGGCTGCGTCACCTGGTTCTGGAGAGAATCGCCTGGCTACTTTGCCTGAGGGAGCAGTCAACTTCCCAGAGGCCCCCAGCCACCTCCCAAGCCACCAAGACTGATGACTGCTCAG
Seq C2 exon
CCATGGGAAACCACTGCAGCCACATGGGAGGACCCCAGGACTTCGAGAAGAGCCCGAGGGACAGATGTAGCCCTCCCCCACCACCTCGGGAGGCCTCGCTGGCGGTGTGTGGGCTGCTGCAGGAGCTGTCCTCCATCCGGCAATTCCTGGAAAAGCGGGATGAGATCCGAGAGGTGGCCCGAGACTGGCTGCGCGTGGGCTCCGTGCTGGACAAGCTGCTATTCCACATTTACCTGCTAGCGGTGCTGGCCTACAGCATCACCCTGGTTATGCTCTGGTCCATCTGGCAGTACGCTTGAGTGGGTACAGCCCAGTGGAGGAGGGGGTACAGTCCTGGTTAGGTGGGGACAGAGGATTTCTGCTTAGGCCCCTCAGGACCCAGGGAATGCCAGGGACATTTTCAAGACACAGACAAAGTCCCGTGCCCTGTTTCCAATGCCAATTCATCTCAGCAATCACAAGCCAAGGTCTGAACCCTTCCACCAAAAACTGGGTGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166736-'11-11,'11-9,13-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=0.132 C2=0.157
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PD(2.9=3.4),PF0293211=Neur_chan_memb=WD(100=33.9),PF0293211=Neur_chan_memb=PU(49.2=49.7)
A:
PF0293211=Neur_chan_memb=FE(33.3=100)
C2:
PF0293211=Neur_chan_memb=PD(40.5=90.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGTCATGGACATCGTGGG
R:
TTTCCAGGAATTGCCGGATGG
Band lengths:
302-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains