GgaEX6025766 @ galGal4
Exon Skipping
Gene
ENSGALG00000007004 | HTR3A
Description
5-hydroxytryptamine (serotonin) receptor 3A, ionotropic [Source:HGNC Symbol;Acc:HGNC:5297]
Coordinates
chr24:4455307-4457810:+
Coord C1 exon
chr24:4455307-4455517
Coord A exon
chr24:4455962-4456195
Coord C2 exon
chr24:4456440-4457810
Length
234 bp
Sequences
Splice sites
3' ss Seq
CCTTGCTGGCATCTCCACAGGCA
3' ss Score
8.7
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTCGTCATCCGGAGGCGTCCTCTCTTCTATACCATCAACCTGCTGCTCCCTAGTATCTTCTTGATGGTGATGGACATTGTAGGCTTCTACCTGCCTCCCAACAGTGGCGAGAGGGTCTCTTTCAAGATCACTCTCCTCCTGGGCTACTCAGTTTTCCTCATCATCGTATCTGACACGCTTCCAGCTACTGCTGTTGGCACCCCACTGATAG
Seq A exon
GCATCTATTTTGTGGTGTGCATGGCGTTGCTCGTCATCAGCCTCACAGAGACCATCTTCATTGTGCGCCTGGTACACAAGCAAGACCTGCAGCCTCACGTCCCCAGCTGGGTGAAGCACTTACTGCTGGAACGTGCCACTGCACTGCTCTGCATCTGGGACAGGAAGAAATTCAGCCAAAGCAGAACACAGAGCTCAGACATCTCCAGGCACGTGGAGAACAATGACAGCACAG
Seq C2 exon
CCAAACTGAACCACTACGGTTCTGAAGACCCTCGGGAGCGAGAGGTGGCAGGAAGCACAAGGCCCACCCCTGCCTCTGCCACTCCAGCAGAGGGCTCTCTGCTCATTCACAGCATCCTGCACGAGATCACCACCATCCGCCAGTTCCTCGAGAAGCGTGATGAATTTCGTGATGTCGCCCGTGAGTGGCTGCAAGTGGGCTACGTGTTGGATGTTCTGCTCTTCCGAGCATACCTGGTGGCTGTCCTGGCCTACACCATCACACTGGGCACACTCTGGTCGGTGTGGCAGTATGCCTGAGCTGCATTTTGGGGCAGGCAAGGTGAGGACCTCAGATGCTGCTGCGCTCCAGAGGCTACTCCCAGGTTCTTGCACTCAGACCCGCCTGTGTTTTCTGACTACAGAGATCCAGACCGGTGCAATTAGCCCACTTCCAGTAGCTCTAGAGCAGCAGCATCTGAGCACTAAGATAAGGGCTGAGGAAAAGCAAGCAAGCAACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007004-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.222
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PD(2.9=8.5),PF0293211=Neur_chan_memb=PU(25.4=80.3)
A:
PF0293211=Neur_chan_memb=FE(34.8=100)
C2:
PF0293211=Neur_chan_memb=PD(39.3=88.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAACCTGCTGCTCCCTAGT
R:
CTCGTGCAGGATGCTGTGAAT
Band lengths:
303-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]