MmuEX0023428 @ mm9
Exon Skipping
Gene
ENSMUSG00000032269 | Htr3a
Description
5-hydroxytryptamine (serotonin) receptor 3A [Source:MGI Symbol;Acc:MGI:96282]
Coordinates
chr9:48707318-48709189:-
Coord C1 exon
chr9:48708979-48709189
Coord A exon
chr9:48708666-48708887
Coord C2 exon
chr9:48707318-48708095
Length
222 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTTTCTCCGGCTTAGGTG
3' ss Score
10.03
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTGATCATCCGCCGGAGGCCTTTATTCTACGCAGTCAGCCTCTTGCTGCCCAGTATCTTCCTCATGGTCGTGGACATTGTGGGCTTTTGCCTGCCCCCGGACAGCGGTGAGAGAGTCTCTTTCAAGATCACACTCCTTCTGGGATACTCAGTCTTCCTCATCATCGTGTCAGACACACTGCCAGCAACGGCCATCGGTACCCCCCTCATTG
Seq A exon
GTGTCTATTTTGTGGTGTGCATGGCTCTGCTAGTGATAAGCCTCGCTGAGACCATCTTCATTGTGCGGCTGGTGCATAAGCAGGACCTACAGCGGCCAGTACCTGACTGGCTGAGGCACCTGGTCCTAGACAGAATAGCCTGGATACTCTGCCTAGGGGAGCAGCCTATGGCCCATAGACCCCCAGCCACCTTCCAAGCCAACAAGACTGATGACTGCTCAG
Seq C2 exon
CCATGGGAAACCACTGCAGCCATGTTGGAGGACCTCAGGACTTGGAGAAGACCCCAAGGGGCAGAGGTAGCCCTCTTCCACCACCAAGGGAGGCCTCGCTGGCTGTGCGCGGTCTCTTGCAAGAGCTATCCTCCATCCGCCACTTCCTGGAGAAGCGGGATGAGATGCGGGAGGTGGCAAGGGACTGGCTGCGGGTGGGATACGTGCTGGACAGGCTGCTGTTCCGCATCTACCTGCTGGCTGTGCTCGCTTACAGCATCACCCTGGTCACTCTCTGGTCCATTTGGCATTATTCTTGAGTGGGCACAGCCTGACAGGGAGGGGCTATGGAACTGGTTAGGATAAGTATGGGGGAGTTCCCTCTTAGGTCCTGCATCCTGTTTCCAACACCAATTCATCTGAGCAACCCCAGTCTCTTTGTCCCCTAAACTTAGTGCTGAAGACCCAGTCTGTCTCTCTGACTTCCCTATCATGGCTTTAAAGCATGATATCCTAGATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032269_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.080 C2=NA
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PD(2.9=8.5),PF0293211=Neur_chan_memb=PU(25.1=80.3)
A:
PF0293211=Neur_chan_memb=FE(32.6=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACATTGTGGGCTTTTGC
R:
ATCTCATCCCGCTTCTCCAGG
Band lengths:
308-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: