HsaEX6063002 @ hg19
Exon Skipping
Gene
ENSG00000136935 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:4424]
Coordinates
chr9:127700856-127703378:-
Coord C1 exon
chr9:127703250-127703378
Coord A exon
chr9:127702385-127702434
Coord C2 exon
chr9:127700856-127701145
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTATCTTTGTCTTCATGCAGGAC
3' ss Score
10.56
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCGCTGGGAGACGTGCGGTTCCGGGTCGCTGCTCGGCTCGCCGGCTGGGCGGTGGGGGTTGGTGACGCGGGCCGGGGCTCACGAGAGGCCCGGGAGGCGGGGCTTTGCTGGCTTCCCAGAGAGAGGCAG
Seq A exon
GACAGAATGCTTTGACCTCCAAGCTGTTTTAAATCTAGTAGATAAGCCAG
Seq C2 exon
ATCCTGTGTTGCCATAAGCCCTTGGCCCACATTTAAGTGGGAATGCAGCTAGCTTGGATGTCTGAAACTTTGTAGGCGCCTCTGTCTGAATCCTGAACACAGGCACCAGGACTACTGAGAGCTCGTCATCTGTGCAGGATAGCCACACAGCAAACATGTTTGCAAAACTGAAGAAGAAAATTGCAGAAGAGACTGCTGTTGCTCAGAGGCCAGGAGGTGCTACTAGGATCCCACGGTCTGTGAGCAAGGAATCAGTTGCCTCAATGGGAGCTGACTCAGGAGATGACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136935-'1-2,'1-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.733
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF068106=Phage_GP20=PU(21.2=40.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCCCAGAGAGAGGCAG
R:
TAGTCCTGGTGCCTGTGTTCA
Band lengths:
134-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)