RnoEX6016676 @ rn6
Exon Skipping
Gene
ENSRNOG00000014493 | Golga1
Description
golgin A1 [Source:RGD Symbol;Acc:1311305]
Coordinates
chr3:23351438-23353425:-
Coord C1 exon
chr3:23353328-23353425
Coord A exon
chr3:23352606-23352654
Coord C2 exon
chr3:23351438-23351720
Length
49 bp
Sequences
Splice sites
3' ss Seq
TTATCTTTATTTTCACACAGGGC
3' ss Score
8.89
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCTCGTCGGCCTGAGGTGGGGGCCGAGAGCCCTCGAGAGTCCGCGGAGGCGTGGCTGCTCTTAGACAGCAAGTGCTCTACTGGAGTCCCTGGACGCAA
Seq A exon
GGCAGTGACTTTGACCTCCAGACTGTCTTAAACATAGTAGATAAGACAG
Seq C2 exon
ATCCTGTGTTGCCAAAATTCTTTGGCCCACATTTAAGTGGGATGCAGCTAGCCTGGAGGTGTGGAACCTTTTAGGTACCTGTGTATGAATTCCATTCACTGAGAAGTCCAGGGGTTAGTTTCCCCTGAAAGATATCCACACAGCAAACATGTTTGCAAAACTAAAGAAGAAAATTGCAGAGGAGACTGCTGTTGCTCAGAGGCCAGGCTGCACTCCTAGGATCCCTCGGTCTGTGAGCAAGGAGTCTGTGGCTTCCATGGGGGCTGACTCAGGAGATGATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014493-'0-1,'0-0,3-1=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.733
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTACTGGAGTCCCTGGAC
R:
ACCCCTGGACTTCTCAGTGAA
Band lengths:
140-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]