MmuEX0021403 @ mm10
Exon Skipping
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:39063242-39065541:-
Coord C1 exon
chr2:39065381-39065541
Coord A exon
chr2:39064675-39064723
Coord C2 exon
chr2:39063242-39063504
Length
49 bp
Sequences
Splice sites
3' ss Seq
TTATCTTTGTTTTTACACAGGGC
3' ss Score
9.74
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGTTCCGGGTCGGTGCTCGGCTCGTCGGCCTGAGGTGGGGGCCAAGCGCCCTCGAGAGTCCGCGGAGGCGTGGCTGCTCCCACACAGCAAGTGCACTACTGGAGTCCCTGGACGCAAGTAGGCCTCCCTCTCTCCCATGGCCTCCGGCGCTCTACCGCGAG
Seq A exon
GGCAGTGACTTTGACCTCCATACTCTTTTAAATATAGTAGATAAGACAG
Seq C2 exon
ATCTTGTGTTGCCAAAATTCTTTGGCCCACATTTAAGTGGGATGCAGCTAGCCTGGAGGTGTGAATGAATTTCATTCACTGAGAAGTCTAGGGGTTAGTTAACCCTGAAAGATATCCACACAGCAAAAATGTTTGCAAAACTAAAGAAGAAAATTGCAGAAGAGACTGCTGTTGCTCAGAGACCAGGCGGCACAACAAGGATCCCACGCTCTGTGAGCAAGGAGTCTGTGGCCTCCATGGGAGCTGACTCTGGAGATGATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754-'1-1,'1-0,3-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.733
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGTGCACTACTGGAGTCC
R:
ATTCACACCTCCAGGCTAGCT
Band lengths:
141-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types