HsaEX6063395 @ hg38
Exon Skipping
Gene
ENSG00000148343 | MIGA2
Description
mitoguardin 2 [Source:HGNC Symbol;Acc:HGNC:23621]
Coordinates
chr9:129049381-129059271:+
Coord C1 exon
chr9:129049381-129049498
Coord A exon
chr9:129049827-129049963
Coord C2 exon
chr9:129059154-129059271
Length
137 bp
Sequences
Splice sites
3' ss Seq
TTCGCCTCACCTGTGCTCAGGCA
3' ss Score
5.92
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATGATGGCAGTGAACTCATCCAGCCCCACAGCCGCGTGCTCGGGACTATGGGATGCCAGAGGGATGGAGGAGTCTCTGACCACCAGCGACGGCAATGCAGAGAGCCTGTACATGCAAG
Seq A exon
GCATGGAGCTGTTTGAGGAAGCTCTGCAGAAGTGGGAGCAGGCACTAAGCGTGGGCCAGCGGGGGGACAGCGGCAGCACCCCCATGCCCAGGGACGGCCTCCGGAACCCAGAGACTGCATCAGAGCCACTGTCTGAG
Seq C2 exon
CCAGAGTCACAGCGGAAGGAGTTTGCAGAGAAGCTGGAGTCCCTGCTGCACCGTGCCTACCACCTGCAGGAGGAGTTCGGCTCCACCTTCCCCGCAGACAGCATGCTGCTAGACCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148343_MULTIEX1-4/5=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.713 A=0.696 C2=0.344
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(18.1=100)
A:
PF102654=DUF2217=FE(10.2=100)
C2:
PF102654=DUF2217=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCAGTGAACTCATCCAGC
R:
CGAGGTCTAGCAGCATGC
Band lengths:
234-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains