MmuEX6100270 @ mm9
Exon Skipping
Gene
ENSMUSG00000026858 | Fam73b
Description
family with sequence similarity 73, member B [Source:MGI Symbol;Acc:MGI:1922035]
Coordinates
chr2:30226635-30231310:+
Coord C1 exon
chr2:30226635-30226752
Coord A exon
chr2:30227053-30227189
Coord C2 exon
chr2:30231193-30231310
Length
137 bp
Sequences
Splice sites
3' ss Seq
GAGCCTTTCTCTTTTCTCAGGCA
3' ss Score
8.26
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATGGTAGTGGTCAATTCATCCAGCCCTACAGCTGCGTGCTCAGGTTCATGGGAAGCCCGAGGGATGGAGGAGTCTGTGCCCACCACTGATGGCAGTGCCGAGAGCCTCTATGTGCAAG
Seq A exon
GCATGGAGCTGTTTGAGGAAGCCCTGCAGAAATGGGAGCAGGCACTGAGTGTGGGCCAGAGAGGGGATGGAGGCAGCACCCCCACACCAGGCGACAGCCTCCAGAACCCAGACACCGCATCAGAAGCACTGTCAGAG
Seq C2 exon
CCAGAGTCCCAACGAAGGGAGTTTGCTGAGAAGCTGGAGTCCCTGCTGCACCGGGCCTACCACCTGCAGGAAGAGTTTGGCTCTACCTTCCCCTCTGACAGCATGCTGTTGGATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026858-'10-10,'10-7,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.708 A=0.659 C2=0.225
Domain overlap (PFAM):
C1:
PF102654=DUF2217=PD(30.8=93.3)
A:
PF102654=DUF2217=FE(12.4=100)
C2:
PF102654=DUF2217=FE(10.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTAGTGGTCAATTCATCCAGC
R:
CAGCATGCTGTCAGAGGGGAA
Band lengths:
226-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: