RnoEX0054547 @ rn6
Exon Skipping
Gene
ENSRNOG00000017513 | Miga2
Description
mitoguardin 2 [Source:RGD Symbol;Acc:1310887]
Coordinates
chr3:8936985-8942337:+
Coord C1 exon
chr3:8936985-8937102
Coord A exon
chr3:8937391-8937527
Coord C2 exon
chr3:8942220-8942337
Length
137 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTCCCGTGTTCTCAGGCA
3' ss Score
9.04
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATGGTAATGGTCAATTCATCCAGCCCTACAGCTGCGTGCTCAGGCTCATGGGAAACCAGAGGGATGGAGGAGTCTGTGCCCACCATGGATGGCAGTGCTGAGAGCCTCTATGTGCAAG
Seq A exon
GCATGGAGCTGTTTGAGGAAGCCCTGCAGAAATGGGAGCAGGCACTGAGTGTGGGTCAGAGAGGGGACGGAGGCAGCACCCCCACACCAGGTGACAGCCTCCAGAACCCAGACACCTCATCTGAAGCACTGTCAGAG
Seq C2 exon
CCAGAGTCACAACGAAGGGAGTTTGCTGAGAAGCTGGAGTCCCTGTTGCACCGGGCCTACCATTTGCAGGAAGAGTTCGGATCCACCCTCCCCTCTGACAACATGCTGCTGGACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017513-'15-10,'15-8,17-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.825 A=0.696 C2=0.225
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(10.8=100)
A:
PF102654=DUF2217=FE(12.4=100)
C2:
PF102654=DUF2217=FE(10.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTAATGGTCAATTCATCCAGCC
R:
AAGGTCCAGCAGCATGTTGTC
Band lengths:
234-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]