HsaEX6063737 @ hg38
Exon Skipping
Gene
ENSG00000198870 | STKLD1
Description
serine/threonine kinase like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr9:133403920-133406096:+
Coord C1 exon
chr9:133403920-133404048
Coord A exon
chr9:133404789-133404929
Coord C2 exon
chr9:133405252-133406096
Length
141 bp
Sequences
Splice sites
3' ss Seq
CACTCCCACCCATCCCCCAGAGC
3' ss Score
7.7
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GCTGCATCAAGGAGCAGCAGTTTGAACAAGTGGTGGCGCTGCTCCTGCAAAGCATCCGGCTGTGCCAGGACAGAGCCCTGCTGGTGAACAATGCCTACCGGGGACTGGCCAGCCTGGTGAAGGTGTCAG
Seq A exon
AGCTGGCGGCCTTCAAGGTGGTGGTGCAGGAGGAGGGCGGCAGTGGCCTCAGCCTCATCAAGGAGACCTACCAGCTCCACAGGGACGACCCGGAGGTGGTGGAGAACGTGGGCATGCTGCTGGTCCACCTGGCTTCCTATG
Seq C2 exon
AGGAGATCCTGCCGGAGCTGGTGTCCAGTAGTATGAAGGCCCTGCTCCAGGAGATCAAGGAGCGCTTCACCTCCAGCCTGGTGAGTGACAGCAGCGCCTTCAGCAAACCAGGCCTCCCTCCAGGTGGAAGCCCCCAGCTGGGGTGCACCACGTCTGGGGGACTGGAATAGATGTTTGTATGGAACTGACCTTGATCTCCACGTGTATAGTTTTCAAGACTGCTCTCCTGCCTGCCTATTATCCCATCTCTATGACTGGGCCAAAATCAATCTTAAACGGGAGGGGTAATCAGACCTCTCCAAAGAGTTTCCTGTCCATGACTGCTGGATTGAGTCACATGAGTAACTGCTCCTGGACCCGGGGACTGTCCACGAAAACTGACTTGCCTGCTTCCTCCTTCCAGGAACTGGTTTCTTGCGCGGAAAAAGTGCTCTTGAGGCTGGAGGCAGCCACCTCTCCCAGCCCACTGGGTGGGGAAGCAGCTCAGCCCTGATGCGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198870-'29-34,'29-32,30-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGTGAACAATGCCTACC
R:
CACGTGGAGATCAAGGTCAGT
Band lengths:
255-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains