HsaEX6063737 @ hg19
Exon Skipping
Gene
ENSG00000198870 | C9orf96
Description
chromosome 9 open reading frame 96 [Source:HGNC Symbol;Acc:28669]
Coordinates
chr9:136269044-136271220:+
Coord C1 exon
chr9:136269044-136269172
Coord A exon
chr9:136269913-136270053
Coord C2 exon
chr9:136270376-136271220
Length
141 bp
Sequences
Splice sites
3' ss Seq
CACTCCCACCCATCCCCCAGAGC
3' ss Score
7.7
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GCTGCATCAAGGAGCAGCAGTTTGAACAAGTGGTGGCGCTGCTCCTGCAAAGCATCCGGCTGTGCCAGGACAGAGCCCTGCTGGTGAACAATGCCTACCGGGGACTGGCCAGCCTGGTGAAGGTGTCAG
Seq A exon
AGCTGGCGGCCTTCAAGGTGGTGGTGCAGGAGGAGGGCGGCAGTGGCCTCAGCCTCATCAAGGAGACCTACCAGCTCCACAGGGACGACCCGGAGGTGGTGGAGAACGTGGGCATGCTGCTGGTCCACCTGGCTTCCTATG
Seq C2 exon
AGGAGATCCTGCCGGAGCTGGTGTCCAGTAGTATGAAGGCCCTGCTCCAGGAGATCAAGGAGCGCTTCACCTCCAGCCTGGTGAGTGACAGCAGCGCCTTCAGCAAACCAGGCCTCCCTCCAGGTGGAAGCCCCCAGCTGGGGTGCACCACGTCTGGGGGACTGGAATAGATGTTTGTATGGAACTGACCTTGATCTCCACGTGTATAGTTTTCAAGACTGCTCTCCTGCCTGCCTATTATCCCATCTCTATGACTGGGCCAAAATCAATCTTAAACGGGAGGGGTAATCAGACCTCTCCAAAGAGTTTCCTGTCCATGACTGCTGGATTGAGTCACATGAGTAACTGCTCCTGGACCCGGGGACTGTCCACGAAAACTGACTTGCCTGCTTCCTCCTTCCAGGAACTGGTTTCTTGCGCGGAAAAAGTGCTCTTGAGGCTGGAGGCAGCCACCTCTCCCAGCCCACTGGGTGGGGAAGCAGCTCAGCCCTGATGCGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198870-'21-23,'21-22,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGTGAACAATGCCTACC
R:
CACGTGGAGATCAAGGTCAGT
Band lengths:
255-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)