GgaEX1056127 @ galGal3
Exon Skipping
Gene
ENSGALG00000003175 | C9orf96
Description
NA
Coordinates
chr17:7571701-7572911:+
Coord C1 exon
chr17:7571701-7571829
Coord A exon
chr17:7572333-7572470
Coord C2 exon
chr17:7572832-7572911
Length
138 bp
Sequences
Splice sites
3' ss Seq
AGCATTTGTTTCCCTTTCAGAAA
3' ss Score
9.33
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GTTTTTTAACTGAAAATGACTATGAGCCCACAACAGTGCTTCTGATGGATGCACTCAGGATGAACCTGGAAAAACCAATGCTGGTGAATAATACCTGCCTGGCATTAGCAAGCCTTCTAAGACTATCTG
Seq A exon
AAATAGCAGCTTTGAGATTTATAACGGATTCAAAAGGCAGTGGAATAAACCTGATCAAAGATGCCTACCGCTTCTACTGTGATGATCCACAAGTGGTGGAAAGTATCTGTGTGCTGATTAATGAGATGGTTCAGTATG
Seq C2 exon
AGGACGTTATGCTGGATATGTTGTCACAGCAAATGGAAGAGTTGCTGTCTGAAATAAAAAGCCGGTTTCCATCTAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003175-'20-19,'20-18,21-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGAAAATGACTATGAGCCCACA
R:
CATGCTAGATGGAAACCGGCT
Band lengths:
202-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]