HsaEX6065158 @ hg38

Exon Skipping

Gene

ENSG00000173391 | OLR1

Description

oxidized low density lipoprotein receptor 1 [Source:HGNC Symbol;Acc:HGNC:8133]

Coordinates

chr12:10166712-10172138:-

Coord C1 exon

chr12:10172002-10172138

Coord A exon

chr12:10169074-10169175

Coord C2 exon

chr12:10166712-10166957

Length

102 bp

Sequences

Splice sites

3' ss Seq

TCTATCCTCTGTCACTCTAGGTC

3' ss Score

10.41

5' ss Seq

AATGTAAGT

5' ss Score

8.62

Exon sequences

Seq C1 exon

ATTTTTAGTTTGTTGAAGTTCGTGACTGCTTCACTCTCTCATTCTTAGCTTGAATTTGGAAATGACTTTTGATGACCTAAAGATCCAGACTGTGAAGGACCAGCCTGATGAGAAGTCAAATGGAAAAAAAGCTAAAG

Seq A exon

GTCTTCAGTTTCTTTACTCTCCATGGTGGTGCCTGGCTGCTGCGACTCTAGGGGTCCTTTGCCTGGGATTAGTAGTGACCATTATGGTGCTGGGCATGCAAT

Seq C2 exon

TATCCCAGGTGTCTGACCTCCTAACACAAGAGCAAGCAAACCTAACTCACCAGAAAAAGAAACTGGAGGGACAGATCTCAGCCCGGCAACAAGCAGAAGAAGCTTCACAGGAGTCAGAAAACGAACTCAAGGAAATGATAGAAACCCTTGCTCGGAAGCTGAATGAGAAATCCAAAGAGCAAATGGAACTTCACCACCAGAATCTGAATCTCCAAGAAACACTGAAGAGAGTAGCAAATTGTTCAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000173391-'0-8,'0-3,3-8

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.308 A=0.000 C2=0.364

Domain overlap (PFAM):

C1:

PF039389=OmpH=PU(13.7=76.9),PF101864=Atg14=PU(9.2=53.8)

A:

PF039389=OmpH=FE(23.3=100),PF101864=Atg14=FE(22.4=100),PF083915=Ly49=PU(23.9=80.0),PF145841=DUF4446=PU(22.2=68.6),PF148511=FAM176=PU(21.2=62.9),PF041117=APG6=PU(16.3=57.1)

C2:

PF039389=OmpH=FE(56.2=100),PF101864=Atg14=FE(53.9=100),PF083915=Ly49=FE(70.1=100),PF145841=DUF4446=FE(75.9=100),PF148511=FAM176=PD(77.9=97.6),PF041117=APG6=FE(66.7=100)

Main Inclusion Isoform:

ENSP00000309124