MmuEX6007363 @ mm9
Exon Skipping
Gene
ENSMUSG00000030162 | Olr1
Description
oxidized low density lipoprotein (lectin-like) receptor 1 [Source:MGI Symbol;Acc:MGI:1261434]
Coordinates
chr6:129449898-129457183:-
Coord C1 exon
chr6:129457053-129457183
Coord A exon
chr6:129452097-129452198
Coord C2 exon
chr6:129449898-129450143
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTTCTGATTCTCCTCTGCAGGTC
3' ss Score
12.01
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GGCAGTTGGCTGAGGTCCTCGACTGTTTCAGTTTTTCACTCTTAGCAGGAATTTGGAGATGACTTTTGATGACAAGATGAAGCCTGCGAATGACGAGCCTGATCAGAAGTCATGTGGCAAGAAGCCTAAAG
Seq A exon
GTCTGCATTTGCTTTCTTCCCCATGGTGGTTCCCTGCTGCTATGACTCTGGTCATCCTCTGCCTGGTGTTGTCAGTGACCCTTATTGTACAGTGGACACAAT
Seq C2 exon
TACGCCAGGTATCTGACCTCTTAAAACAATACCAAGCGAACCTTACTCAGCAGGATCGTATCCTGGAAGGGCAGATGTTAGCCCAGCAGAAGGCAGAAAACACTTCACAGGAATCAAAGAAGGAACTGAAAGGAAAGATAGACACCCTCACCCAGAAGCTGAACGAGAAATCCAAAGAGCAGGAGGAGCTTCTACAGAAGAATCAGAACCTCCAAGAAGCCCTGCAAAGAGCTGCAAACTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030162-'0-2,'0-0,1-2=AN
Average complexity
A_C1
Mappability confidence:
67%=100=60%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=0.000 C2=0.739
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAAGCCTGCGAATGACGA
R:
AGCTCCTCCTGCTCTTTGGAT
Band lengths:
246-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: