RnoEX0062246 @ rn6
Exon Skipping
Gene
ENSRNOG00000056219 | Olr1
Description
oxidized low density lipoprotein receptor 1 [Source:RGD Symbol;Acc:620515]
Coordinates
chr4:163254975-163261958:-
Coord C1 exon
chr4:163261774-163261958
Coord A exon
chr4:163257646-163257747
Coord C2 exon
chr4:163254975-163255220
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTGATTCTCCTTTCCTGCAGGGC
3' ss Score
11.56
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
CTCTGCTAGATAAGAGCAGCTATTTAAACTGCATCAGAAGCTCGAGCACTGGCAGTTGGCTGACTGAGGTCCTCTACTGTTTCAGTTTCCCATTCTTGGCATGAATTTGGAAATGGCTTTTGATGACAAGATGAAGCCTGTGAATGGCCAGCCTGATCAGAAGTCATGTGGCAAGAAGCCTAAAG
Seq A exon
GGCTGCATTTGCTTTCTTCCACATGGTGGTGCCCTGCTGCTGTGACTCTGGCCATCCTTTGCCTAGTGTTATCAGTGACCCTTATTGTACAGCAGACACAGT
Seq C2 exon
TACTCCAGGTATCTGACCTCCTAAAGCAATACCAAGCAAACCTTACTCAGCAGGATCATATCCTGGAGGGGCAGATGTCAGCCCAGAAGAAAGCAGAAAATGCTTCACAAGAATCAAAGAGGGAACTGAAGGAACAGATAGACACCCTCACCTGGAAGCTAAACGAGAAATCCAAAGAGCAGGAGAAGCTTCTGCAGCAGAATCAGAACCTCCAAGAAGCCCTGCAGAGAGCTGTGAACGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056219-'0-2,'0-1,3-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.552 A=0.000 C2=0.253
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083176=Spc7=PU(15.5=21.7)
Main Skipping Isoform:
ENSRNOT00000086390fB10075
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAATGGCCAGCCTGATCAG
R:
CTGCAGAAGCTTCTCCTGCTC
Band lengths:
243-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]