HsaEX6065171 @ hg19
Exon Skipping
Gene
ENSG00000205810 | KLRC3
Description
killer cell lectin-like receptor subfamily C, member 3 [Source:HGNC Symbol;Acc:6376]
Coordinates
chr12:10564921-10569366:-
Coord C1 exon
chr12:10569266-10569366
Coord A exon
chr12:10568303-10568393
Coord C2 exon
chr12:10564921-10565215
Length
91 bp
Sequences
Splice sites
3' ss Seq
TGGATTTTTCTCCATTACAGGAT
3' ss Score
9.85
5' ss Seq
ATTGTGAGC
5' ss Score
3.78
Exon sequences
Seq C1 exon
AAATTTCTGGCCAGCATTTTACCTTCCTCATGGATTGGTGTGTTTCGTAACAGCAGTCATCATCCATGGGTGACAATAAATGGTTTGGCTTTCAAACATGA
Seq A exon
GATAAAAGACTCAGATCATGCTGAACGTAACTGTGCAATGCTACATGTACGTGGACTTATATCAGACCAGTGTGGATCTTCAAGAATCATT
Seq C2 exon
AGACGGGGTTTCATCATGTTGACCAGGCTGGTCTTGAACTCCTGAGCTCAAGAAATCAACACATCTTGGCCTCCCAAGTTGCTGGGATTACTGACACAAGCCACCGCCCCTGAGTGCTCATGTACCATTTAGCTTGTGTTTTAAAAATCTACTTTTTCTGCCCTCCCTATTTTTAACTAGATGATGTTTTAAAAATTACTTTTCCCTCTCTATATAGTTTGATTTAAGCATTAGTCATTTACAACAAATATTAATATTAAAATGCAGACCGTTATGATTGGAAAATAAATCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205810-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=75=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(35.5=100)
A:
PF0005916=Lectin_C=FE(32.3=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAGCATTTTACCTTCCT
R:
TTGGGAGGCCAAGATGTGTTG
Band lengths:
171-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)