MmuEX0025829 @ mm9
Exon Skipping
Gene
ENSMUSG00000052736 | Klrc2
Description
killer cell lectin-like receptor subfamily C, member 2 [Source:MGI Symbol;Acc:MGI:1336162]
Coordinates
chr6:129597514-129606930:-
Coord C1 exon
chr6:129606830-129606930
Coord A exon
chr6:129606364-129606506
Coord C2 exon
chr6:129597514-129599697
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTGAATATGCACCATTGTAGGAT
3' ss Score
6.34
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GATTTTCTGCAATCTCTTTCACTGGTCTCATGGACTGGAATCCTTCGGAAGGGCAGAGGTCAGGCCTGGGACTGGAAAAAAGACTCAATTTTCAAACCAAA
Seq A exon
GATAGCAGAGATTTCCCATGATGAATGTAACTGTGCCATGATGTCAGCTTCTGGTCTCACAGCAGACAACTGTACAACTTTACATCCATATCTTTGTAAGTGTAAATTCCCCATCTGAAACACCTGCACTGGAAGTCTGCCAG
Seq C2 exon
ATCTCTGGCTCCCTTTAGATGAATTTGCAACTAGAATCCAAAGGATCATCAGCTTTCTCTAACTGTCCTGTTCGACGGTAACAAACACAGTTATTGTTACCTATAAGAATGCCTTTTGAATGATTATGGGGAATTTTTCATTCAGAAGGATGGAAGTCTCTGTACATTCTTCTCTGAACAAAATCATCAGAGAACACATTTAATATATTCCTATTTATGTAATTTTGTTAAAAAATCTTTCCAATGTTTATTCTTAATTTTGTCAAAAGTACAATAACAAAATTATTGCAAAGTGGTTTTTAGTCTATGTGCTGTGATTTTGTAACTCAATGTCATGCTGGAAATATTTCTTAAGGTGCTAATTAGTATTTATAAGTGGTTATAATAATTATTGTGAAATTTGGTCTGTTTTAGTTGTGAGCCTAGCCTTTAACAGCTGAGTCATCTATCCAGTCCAAATTTTGGTCAGTTTTGAATCTTTTTCCACATAAAATAGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052736_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(34.4=100)
A:
PF0005916=Lectin_C=PD(35.4=85.0)
C2:
PF0005916=Lectin_C=PD(7.5=62.5)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGGTCTCATGGACTGGA
R:
ACAGAGACTTCCATCCTTCTGA
Band lengths:
246-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: