MmuEX0025829 @ mm10
Exon Skipping
Gene
ENSMUSG00000052736 | Klrc2
Description
killer cell lectin-like receptor subfamily C, member 2 [Source:MGI Symbol;Acc:MGI:1336162]
Coordinates
chr6:129649537-129656912:-
Coord C1 exon
chr6:129656812-129656912
Coord A exon
chr6:129656346-129656488
Coord C2 exon
chr6:129649537-129649679
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTGAATATGCACCATTGTAGGAT
3' ss Score
6.34
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GATTTTCTGCAATCTCTTTCACTGGTCTCATGGACTGGAATCCTTCGGAAGGGCAGAGGTCAGGCCTGGGACTGGAAAAAAGACTCAATTTTCAAACCAAA
Seq A exon
GATAGCAGAGATTTCCCATGATGAATGTAACTGTGCCATGATGTCAGCTTCTGGTCTCACAGCAGACAACTGTACAACTTTACATCCATATCTTTGTAAGTGTAAATTCCCCATCTGAAACACCTGCACTGGAAGTCTGCCAG
Seq C2 exon
ATCTCTGGCTCCCTTTAGATGAATTTGCAACTAGAATCCAAAGGATCATCAGCTTTCTCTAACTGTCCTGTTCGACGGTAACAAACACAGTTATTGTTACCTATAAGAATGCCTTTTGAATGATTATGGGGAATTTTTCATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052736_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(34.4=100)
A:
PF0005916=Lectin_C=PD(35.4=85.0)
C2:
PF0005916=Lectin_C=PD(7.5=62.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTTTCTGCAATCTCTTTCACTGGT
R:
TTCCCCATAATCATTCAAAAGGCA
Band lengths:
234-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types