HsaEX6068023 @ hg19
Exon Skipping
Gene
ENSG00000165899 | C12orf64
Description
otogelin-like [Source:HGNC Symbol;Acc:26901]
Coordinates
chr12:80752640-80761519:+
Coord C1 exon
chr12:80752640-80752680
Coord A exon
chr12:80760354-80760417
Coord C2 exon
chr12:80761341-80761519
Length
64 bp
Sequences
Splice sites
3' ss Seq
TAGTAGTATATTTTCAATAGGGA
3' ss Score
2.28
5' ss Seq
GTGGTAACT
5' ss Score
5.08
Exon sequences
Seq C1 exon
AATGTAACTGTGAAAACCTTATTATGCCAACTTGTGAAGTG
Seq A exon
GGAGAATTTACTGCAATAGACCATAACTTCCAGAGTGATTGTGGATGCATACAGTATCTCTGTG
Seq C2 exon
AAAAGGATGATGTGTGTGTATTTCAAGAAGTATCAGTATTGAATCCTGGACAATCCATGATAAAGTATTTGGAAGAAGACTTTTGTTATGCTATAGAGTGTCTGGAAGAAAAAGATAACCATACGGGCTTTCACACTCTGAATTTTACACTGGTGAATTGTTCAAAAAAATGTGATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899-'41-45,'41-44,42-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTATTATGCCAACTTGTGAAGTG
R:
TGGTTATCTTTTTCTTCCAGACACT
Band lengths:
147-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)