HsaEX6068023 @ hg38
Exon Skipping
Gene
ENSG00000165899 | OTOGL
Description
otogelin like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr12:80358671-80367739:+
Coord C1 exon
chr12:80358671-80358775
Coord A exon
chr12:80366574-80366637
Coord C2 exon
chr12:80367561-80367739
Length
64 bp
Sequences
Splice sites
3' ss Seq
TAGTAGTATATTTTCAATAGGGA
3' ss Score
2.28
5' ss Seq
GTGGTAACT
5' ss Score
5.08
Exon sequences
Seq C1 exon
TATGTGAACCAAACCTTTGTCCTATGCCATTACTCAACTGTGCAGAAGATATGAATCTTGTGAAAGAAAATGTATCTGGTCAATGTTGCCCAACATGGCACTGTG
Seq A exon
GGAGAATTTACTGCAATAGACCATAACTTCCAGAGTGATTGTGGATGCATACAGTATCTCTGTG
Seq C2 exon
AAAAGGATGATGTGTGTGTATTTCAAGAAGTATCAGTATTGAATCCTGGACAATCCATGATAAAGTATTTGGAAGAAGACTTTTGTTATGCTATAGAGTGTCTGGAAGAAAAAGATAACCATACGGGCTTTCACACTCTGAATTTTACACTGGTGAATTGTTCAAAAAAATGTGATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899_MULTIEX2-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATTACTCAACTGTGCAGA
R:
TGGATTGTCCAGGATTCAATACTGA
Band lengths:
138-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains