RnoEX6031461 @ rn6
Exon Skipping
Gene
ENSRNOG00000030316 | Otogl
Description
otogelin-like [Source:RGD Symbol;Acc:1589018]
Coordinates
chr7:51920427-51927054:+
Coord C1 exon
chr7:51920427-51920467
Coord A exon
chr7:51925816-51925879
Coord C2 exon
chr7:51926876-51927054
Length
64 bp
Sequences
Splice sites
3' ss Seq
TGATAATTTCTTTCCAATAGGGA
3' ss Score
9.16
5' ss Seq
GTGGTAAAT
5' ss Score
5.18
Exon sequences
Seq C1 exon
AATGCAACTGTGAAAATCTTGTCACGCCAACTTGTGAAGTG
Seq A exon
GGAGAATTTGCCACAATAGATCAAACCTTTCAGACTGACTGTGGATGTGTACAGTACCTCTGTG
Seq C2 exon
AAAAGGATGATGTGTGTGTGTTTCAAGAAGTATCAGTGTTGAATCCTGGCCAATCTCTAATAAAGTATTTGGAAGAGGACTTTTGTTATGCAATCGAATGTCTGGATGAAAAAGATAACTATACAGACTTTCATACTTTGAATGTTACAATGGTGAACTGTTCCAAAGACTGTGATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030316-'59-65,'59-64,60-65=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGTCACGCCAACTTGTGA
R:
TCATCCAGACATTCGATTGCA
Band lengths:
134-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]