HsaEX6069933 @ hg19
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124395083-124399097:+
Coord C1 exon
chr12:124395083-124395219
Coord A exon
chr12:124397645-124397862
Coord C2 exon
chr12:124398876-124399097
Length
218 bp
Sequences
Splice sites
3' ss Seq
TGCAAATTGTCTTCACTTAGGTG
3' ss Score
7.3
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
GCCTCTTGAAGACTCTTAATACCACAACTGAAGAAATGGAAGCTGTCAGCAAAGCCGGGCTGGGGATGCTGAAATTTGTTGAAGCTGTAATGGGCTACTGTGATGTTTTCAGAGAAATCAAGCCCAAAAGAGAGAAG
Seq A exon
GTGGCCAGGCTGGAGCGGAATTTTTACCTCACTAAACGGGAACTGGAAAGGATCCAGAATGAGTTGGCAGCAATTCAGAAAGAGCTGGAAACATTGGGTGCCAAATATGAGGCCGCCATACTGGAAAAGCAGAAGCTGCAGGAAGAAGCCGAGATCATGGAGAGGCGGCTGATTGCCGCAGACAAACTCATCTCGGGTCTGGGGTCAGAAAACATCAG
Seq C2 exon
GTGGCTGAACGACCTGGATGAGCTGATGCACCGGCGCGTGAAGCTGCTGGGGGACTGCCTGCTCTGCGCGGCTTTCCTCAGCTACGAGGGAGCCTTCACCTGGGAGTTCCGTGACGAGATGGTCAATCGGATTTGGCAAAATGACATCCTGGAGCGGGAGATCCCCCTGAGCCAGCCTTTCCGGCTGGAAAGCCTGCTCACGGATGATGTTGAGATCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'63-64,'63-63,64-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(19.4=100),PF064196=COG6=FE(38.1=100),PF097264=Macoilin=FE(39.1=100)
A:
PF127772=MT=FE(31.5=100),PF064196=COG6=PD(43.2=68.9),PF097264=Macoilin=PD(55.7=86.5)
C2:
PF127772=MT=PD(14.5=65.3),PF127812=AAA_9=PU(3.9=12.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGGGGATGCTGAAATTT
R:
TCAACATCATCCGTGAGCAGG
Band lengths:
294-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)