HsaEX6069933 @ hg38
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123910536-123914550:+
Coord C1 exon
chr12:123910536-123910672
Coord A exon
chr12:123913098-123913315
Coord C2 exon
chr12:123914329-123914550
Length
218 bp
Sequences
Splice sites
3' ss Seq
TGCAAATTGTCTTCACTTAGGTG
3' ss Score
7.3
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
GCCTCTTGAAGACTCTTAATACCACAACTGAAGAAATGGAAGCTGTCAGCAAAGCCGGGCTGGGGATGCTGAAATTTGTTGAAGCTGTAATGGGCTACTGTGATGTTTTCAGAGAAATCAAGCCCAAAAGAGAGAAG
Seq A exon
GTGGCCAGGCTGGAGCGGAATTTTTACCTCACTAAACGGGAACTGGAAAGGATCCAGAATGAGTTGGCAGCAATTCAGAAAGAGCTGGAAACATTGGGTGCCAAATATGAGGCCGCCATACTGGAAAAGCAGAAGCTGCAGGAAGAAGCCGAGATCATGGAGAGGCGGCTGATTGCCGCAGACAAACTCATCTCGGGTCTGGGGTCAGAAAACATCAG
Seq C2 exon
GTGGCTGAACGACCTGGATGAGCTGATGCACCGGCGCGTGAAGCTGCTGGGGGACTGCCTGCTCTGCGCGGCTTTCCTCAGCTACGAGGGAGCCTTCACCTGGGAGTTCCGTGACGAGATGGTCAATCGGATTTGGCAAAATGACATCCTGGAGCGGGAGATCCCCCTGAGCCAGCCTTTCCGGCTGGAAAGCCTGCTCACGGATGATGTTGAGATCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'81-76,'81-75,83-76
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(13.3=100)
A:
PF127772=MT=FE(21.3=100)
C2:
PF127772=MT=PD(14.5=65.3),PF127812=AAA_9=PU(3.9=12.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGGGGATGCTGAAATTT
R:
TCAACATCATCCGTGAGCAGG
Band lengths:
294-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains