HsaEX6069934 @ hg38
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123909261-123913315:+
Coord C1 exon
chr12:123909261-123909442
Coord A exon
chr12:123910536-123910672
Coord C2 exon
chr12:123913098-123913315
Length
137 bp
Sequences
Splice sites
3' ss Seq
TATTGCATGTTTCACGTTAGGCC
3' ss Score
5.8
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
GTCGTTTGCTAAGCCCCCGAAGCAGGTGCAGACGGTCTGCGAATGCATCCTCATCATGAAAGGGTACAAAGAGCTGAACTGGAAAACAGCCAAGGGCGTGATGTCCGACCCGAATTTCCTGCGGTCTCTGATGGAGATTGATTTTGATTCGATTACCCAGAGCCAAGTGAAAAACATCAAAG
Seq A exon
GCCTCTTGAAGACTCTTAATACCACAACTGAAGAAATGGAAGCTGTCAGCAAAGCCGGGCTGGGGATGCTGAAATTTGTTGAAGCTGTAATGGGCTACTGTGATGTTTTCAGAGAAATCAAGCCCAAAAGAGAGAAG
Seq C2 exon
GTGGCCAGGCTGGAGCGGAATTTTTACCTCACTAAACGGGAACTGGAAAGGATCCAGAATGAGTTGGCAGCAATTCAGAAAGAGCTGGAAACATTGGGTGCCAAATATGAGGCCGCCATACTGGAAAAGCAGAAGCTGCAGGAAGAAGCCGAGATCATGGAGAGGCGGCTGATTGCCGCAGACAAACTCATCTCGGGTCTGGGGTCAGAAAACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'78-81,'78-74,81-81=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(18.0=100)
A:
PF127772=MT=FE(13.3=100)
C2:
PF127772=MT=FE(21.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGCTCTTCTCTCCTGCT
R:
GCAGTGAGCTAAGATCGCACC
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains