GgaEX0004156 @ galGal3
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4914240-4917019:-
Coord C1 exon
chr15:4916838-4917019
Coord A exon
chr15:4915731-4915867
Coord C2 exon
chr15:4914240-4914857
Length
137 bp
Sequences
Splice sites
3' ss Seq
CTTTGTCTTTGTCCATTTAGCTG
3' ss Score
9.46
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GTCCTTTGCAAAACCCCCTAAACAGGTGCAAGCTGTTTTGGAATGTGTTCTTATAATGAGGGGGTACAAAGAATTAAACTGGAAGACAGCCAAAGGAATGATGTCAGAGGCAAATTTCCTGCGATCTCTGATGGAATTAGATTTTGATGGAATTACTTACGGCCAAGTGAAATCTGTCCGAG
Seq A exon
CTGTGTTAAAGAGTCTTAATACTACCTTCACTGAAATGGAACTTGTTAGCAGAGCTGGCCTGGGAATGCTCAAGTTTGTTGAAGCGGTGATGAGCTACTGTGATGTAGTTAGAGAAGTCAAGCCAAAGAGAGAGAAG
Seq C2 exon
GTAGCAAGGCTAGAACGGAACTATTACTTAAGTAAGAGAGAACTGGAAAAGATAAATGCAGAGCTATCTACACTTCAGGAGGAACTTAAAGCTTTGGGGAACAAATATCAAGAGGCAATAAAAGAAAAGCAACAGTTACAAGAAGAAGCAGAGATTATGCAGAGAAGATTGGAAGCTGCTGACAAGCTCATCTTCGGCTTGAGATCTGAGAACAAGAGGTAAGTGTAGATTCAAAGGGGAATGTTCTTGACCTCAGAGGATCATTTGCCAGGAATAAAATCTATCAAAATGAGATATTTTGGATGATTTGGATTTTTGGAAATGCCTTTCTCTGATTTTTCTTTTTTTCTTCCTTCTGCTAGGAGTTAATATGCATTCTGACTACTCTTCATTAGATCTTGGAAAGTAGTAACAGCGAAATTTTAATGCAGAACAAAAAGGTTTACTAGGGTTACAAGGAAGATGGTTCAAACCTCTCAGTGTCATCACAATAACTGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170_CASSETTE4
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(18.0=100)
A:
PF127772=MT=FE(13.3=100)
C2:
PF127772=MT=FE(21.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGGCAAATTTCCTGCGA
R:
GCAGCTTCCAATCTTCTCTGCA
Band lengths:
258-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]