DreEX6011104 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27757856-27759800:+
Coord C1 exon
chr5:27757856-27758037
Coord A exon
chr5:27758150-27758286
Coord C2 exon
chr5:27759583-27759800
Length
137 bp
Sequences
Splice sites
3' ss Seq
TATGGTTGTCATTTGCCTAGCCT
3' ss Score
3.33
5' ss Seq
AAGGTCTGA
5' ss Score
4.3
Exon sequences
Seq C1 exon
ATCCTTCACCAAACCACCTAAACAGGTGCAGACTGTGTGCGAGTGCATCCTTGTCATTCGGGGCTATAAAGAGATCAACTGGAAGACAGCCAAGGGCATGATGTCAGAGGGCAACTTCCTGCGCTCGCTTATGGAAATGGACTGTGACTCTATCAACGCCAATCAAGTAAAACATGTCAAAG
Seq A exon
CCTATCTAAGAAACCTCAACACCAGTTTGGAGGAGATGCAAGGCATCAGTAAAGCTGGGTCTGGGATGCTAAGGTTCGTGGAGGCAGTCATGGGCTACTGTGAAGTGGCCAGAGACATCAAACCTAAAAGAGAAAAG
Seq C2 exon
GTGGCACGTCTGGAGAGGAATTTCCACCAGAGCAAACGTGAGCTTGAACGAATCCAAAATGAGCTTGGCGCCATCCAGAAAGAACTCAGAGCTCTTGGAGACAAATATGAGGGAGCCATGACAGAGAAACAACTCCTGCAGGAGGAGGCCGAGGTCATGGAGAGAAGACTCGTTGCTGCAGACAAACTCATCTCAGGCCTGGCATCAGAGAACAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'63-61,'63-60,64-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(18.0=100)
A:
PF127772=MT=FE(13.3=100)
C2:
PF127772=MT=FE(21.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTCCTGCGCTCGCTTATG
R:
GCAGCAACGAGTCTTCTCTCC
Band lengths:
249-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]