HsaEX6069934 @ hg19
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124393808-124397862:+
Coord C1 exon
chr12:124393808-124393989
Coord A exon
chr12:124395083-124395219
Coord C2 exon
chr12:124397645-124397862
Length
137 bp
Sequences
Splice sites
3' ss Seq
TATTGCATGTTTCACGTTAGGCC
3' ss Score
5.8
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
GTCGTTTGCTAAGCCCCCGAAGCAGGTGCAGACGGTCTGCGAATGCATCCTCATCATGAAAGGGTACAAAGAGCTGAACTGGAAAACAGCCAAGGGCGTGATGTCCGACCCGAATTTCCTGCGGTCTCTGATGGAGATTGATTTTGATTCGATTACCCAGAGCCAAGTGAAAAACATCAAAG
Seq A exon
GCCTCTTGAAGACTCTTAATACCACAACTGAAGAAATGGAAGCTGTCAGCAAAGCCGGGCTGGGGATGCTGAAATTTGTTGAAGCTGTAATGGGCTACTGTGATGTTTTCAGAGAAATCAAGCCCAAAAGAGAGAAG
Seq C2 exon
GTGGCCAGGCTGGAGCGGAATTTTTACCTCACTAAACGGGAACTGGAAAGGATCCAGAATGAGTTGGCAGCAATTCAGAAAGAGCTGGAAACATTGGGTGCCAAATATGAGGCCGCCATACTGGAAAAGCAGAAGCTGCAGGAAGAAGCCGAGATCATGGAGAGGCGGCTGATTGCCGCAGACAAACTCATCTCGGGTCTGGGGTCAGAAAACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'62-63,'62-62,63-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(25.9=100),PF064196=COG6=PU(16.9=32.8),PF097264=Macoilin=PU(3.5=6.6)
A:
PF127772=MT=FE(19.4=100),PF064196=COG6=FE(38.1=100),PF097264=Macoilin=FE(39.1=100)
C2:
PF127772=MT=FE(31.5=100),PF064196=COG6=PD(43.2=68.9),PF097264=Macoilin=PD(55.7=86.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGATGTCCGACCCGAATTT
R:
GATCTCGGCTTCTTCCTGCAG
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)