MmuEX6021053 @ mm9
Exon Skipping
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125294920-125297769:+
Coord C1 exon
chr5:125294920-125295101
Coord A exon
chr5:125296377-125296513
Coord C2 exon
chr5:125297552-125297769
Length
137 bp
Sequences
Splice sites
3' ss Seq
TCACTGCATCTGCCCTCCAGGCC
3' ss Score
8.67
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTCATTCGCGAAGCCCCCGAAGCAAGTGCAGACAGTCTGTGAGTGCATCCTCATCATGAAAGGCTACAAGGAGCTTAACTGGAAAACTGCCAAGGGCATGATGTCCGACCCCAACTTCTTGAGGTCCCTGATGGAAATCGACTTCGATTCCATCACCCAGGGTCAAGTGAAGAACATCAAAG
Seq A exon
GCCTCCTAAAGACTCTGAACACCACAATCGAAGAGATGGAGGCTGTGAGCAAGGCAGGGCTGGGCATGCTGAAGTTCGTGGAGGCCGTCATGGGCTACTGTGATGTGTTTCGGGAGATCAAGCCCAAAAGAGAAAAG
Seq C2 exon
GTGGCCAGGCTGGAGCGGAATTTCTTCCTAACCAAACGGGAGCTAGAGAGGATCCAGAACGAGCTGGCAGCGATCCAAAAGGAACTGGAGGCTCTGGGGGCCAAGTATGAGGCCGCCATCCTGGAGAAGCAGAAACTGCAGGAGGAGGCAGAGATTATGGAGAGGCGGTTGATCGCAGCGGACAAGCTCATCTCTGGGCTGGGCTCAGAAAACGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'58-61,'58-60,59-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(18.0=100)
A:
PF127772=MT=FE(13.3=100)
C2:
PF127772=MT=FE(21.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGTCCGACCCCAACTTCT
R:
CGCCTCTCCATAATCTCTGCC
Band lengths:
251-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: