BtaEX6072241 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54068766-54072992:-
Coord C1 exon
chr17:54072811-54072992
Coord A exon
chr17:54070631-54070767
Coord C2 exon
chr17:54068766-54068983
Length
137 bp
Sequences
Splice sites
3' ss Seq
ATTGCGTCTTTGACCTTTAGGCC
3' ss Score
8.27
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTCCTTTGCTAAGCCCCCAAAGCAGGTACAGACGGTCTGCGAATGCATCCTCATCATGAAAGGCTACAAAGAACTCAACTGGAAAACCGCCAAGGGCATGATGTCCGACCCCAACTTCCTCAGGTCTCTGATGGAAATCGACTTTGATTCCATTACCCAGAGCCAAGTTAAGAACATCAGAG
Seq A exon
GCCTCTTGAAGACTCTCAATACCACGACCGAGGAAATGGAAGCCGTGAGCAAGGCAGGCTTGGGGATGCTGAAGTTTGTTGAAGCTGTGATGGGCTACTGTGATGTTTTTAAAGAAATCAAACCCAAAAGAGACAAG
Seq C2 exon
GTGGCCAGGCTGGAGCGGAATTTTTACCTTACCAAACGTGAGCTGGAGAAGATCCAGAATGAGCTGGCAGCGATCCAGAGGGAACTGGAAGCTCTGGGGGCCAAATATGAGGCGGCCATACTGGAGAAGCAGAAGCTGCAAGAGGAAGCCGAGATCATGGAGAGACGGCTGATCGCGGCCGACAAGCTCATCTCGGGGTTGGGCTCAGAGAATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'60-64,'60-63,61-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(18.0=100)
A:
PF127772=MT=FE(13.3=100)
C2:
PF127772=MT=FE(21.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCAACTTCCTCAGGTCTC
R:
CGTCTCTCCATGATCTCGGCT
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]