MmuEX6021052 @ mm9
Exon Skipping
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125296377-125298151:+
Coord C1 exon
chr5:125296377-125296513
Coord A exon
chr5:125297552-125297769
Coord C2 exon
chr5:125297930-125298151
Length
218 bp
Sequences
Splice sites
3' ss Seq
TGCTCACTGTCTTCACACAGGTG
3' ss Score
9.79
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCCTCCTAAAGACTCTGAACACCACAATCGAAGAGATGGAGGCTGTGAGCAAGGCAGGGCTGGGCATGCTGAAGTTCGTGGAGGCCGTCATGGGCTACTGTGATGTGTTTCGGGAGATCAAGCCCAAAAGAGAAAAG
Seq A exon
GTGGCCAGGCTGGAGCGGAATTTCTTCCTAACCAAACGGGAGCTAGAGAGGATCCAGAACGAGCTGGCAGCGATCCAAAAGGAACTGGAGGCTCTGGGGGCCAAGTATGAGGCCGCCATCCTGGAGAAGCAGAAACTGCAGGAGGAGGCAGAGATTATGGAGAGGCGGTTGATCGCAGCGGACAAGCTCATCTCTGGGCTGGGCTCAGAAAACGTCAG
Seq C2 exon
GTGGCTGAACGACCTGGATGAGCTAATGCACCGGCGGGTGAAGCTGCTAGGCGACTGCTTGCTCTGTGCGGCCTTCTTGAGCTACGAGGGCGCCTTTACCTGGGAGTTTCGTGATGAGATGGTCAACCAGGTGTGGCAGAACGACATCTTGGATCGCGACATCCCCCTGAGCCAGCCTTTCCGACTGGAGAACCTCCTCACAGATGATGTTGAGATTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'59-62,'59-61,60-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(13.3=100)
A:
PF127772=MT=FE(21.3=100)
C2:
PF127772=MT=PD(14.5=65.3),PF127812=AAA_9=PU(3.9=12.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAGAGATGGAGGCTGTGA
R:
GAGGTTCTCCAGTCGGAAAGG
Band lengths:
306-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: