HsaEX6069984 @ hg19
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124252153-124257489:+
Coord C1 exon
chr12:124252153-124252236
Coord A exon
chr12:124256148-124256245
Coord C2 exon
chr12:124257381-124257489
Length
98 bp
Sequences
Splice sites
3' ss Seq
AACTGATTGCTGTTTTGCAGCTA
3' ss Score
6.97
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
ATGAGATACCTGTCCTGTCTGAAGAGGGAGAAGAGGAAGAAGAGACTTATTCTCAAAAAGTGGAGTCCGTGGATAAAGTGCGAG
Seq A exon
CTAAGCGTGTGTCACTGAGAACCGAATCTCTAGGCCAACCTCTAAACAGAGAGGATGAAGAAATGGACAAAGAGATTTCAGAAAAACTCCCTTCCAAA
Seq C2 exon
AGAACTGCGAAGCACATCATGGAAAAGATGCATCTCCACATGCTCTGTACCCCTCTTCCCGAGGAGTTCCTGGACCAAAACGTGGTGTTTTTCCTCAGAAATACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.793 A=0.727 C2=0.054
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTCCTGTCTGAAGAGGG
R:
TCTGAGGAAAAACACCACGTT
Band lengths:
176-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)