BtaEX6072192 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54189516-54194646:-
Coord C1 exon
chr17:54194560-54194646
Coord A exon
chr17:54191487-54191587
Coord C2 exon
chr17:54189516-54189624
Length
101 bp
Sequences
Splice sites
3' ss Seq
CATTGCATCATGTTTTGCAGCTA
3' ss Score
6.66
5' ss Seq
AAAGTACGT
5' ss Score
7.99
Exon sequences
Seq C1 exon
ATGATGACATTCCTGGCCTGTCTGAAGAGGAAGAAGAGGAAGAAGAGACAGAGTTTCAAAAAGTGGAGTCGATAGATAGAGCATCAG
Seq A exon
CTAAGAATCTGCAGCTGAGAATGTATTCTATACATCGTCCTCGCATCAGCCTTGAGGAGGAAGAGATGGACCTTGAGAGTATAGAGAACCTCCCCGTCAAA
Seq C2 exon
AAAACTGTTAAGCAAATGGTGGAAAAGACATATCTCCAGGTGCTTCGTCCTCCTGTTCCTGAGGAGTTTCTGGACCAGAATGTTTTGTTTTTTCTCAGAAATACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'1-4,'1-2,2-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGACATTCCTGGCCTGTC
R:
AAAAACAAAACATTCTGGTCCAGA
Band lengths:
178-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]