MmuEX0014948 @ mm9
Exon Skipping
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125207198-125210530:+
Coord C1 exon
chr5:125207198-125207278
Coord A exon
chr5:125209433-125209533
Coord C2 exon
chr5:125210422-125210530
Length
101 bp
Sequences
Splice sites
3' ss Seq
CAATGCATTGTGTTTTGCAGTCA
3' ss Score
6.54
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
Exon sequences
Seq C1 exon
ACATTCCCTTGGTCTTTGATGAGGAGGGAGAGGAAGAGGAGAGTGACTATCAAAAAGTAGAGGCCACCGAAAAAATGTCAG
Seq A exon
TCAAGTTCTCAAAGCTGAGAAGTGACTCCATGACCCCCTCTCTATTTGATATGGATGACGAAGAGCCAGATGTAGAGACCTACAGCAAACTGTATGGCAAG
Seq C2 exon
AAAATTGTAAAACGCATCATCAACAAGCTGGAGCTGCGTGTGAACCTCGCCTCTCTTCCCGAGGAGTTTTTGCAACAGAATGTGGTTTTTTTCCTCAGAAGTTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.536 A=0.206 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTCCCTTGGTCTTTGATGAGG
R:
AAAACCACATTCTGTTGCAAAAACT
Band lengths:
170-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: