MmuEX0014948 @ mm10
Exon Skipping
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124726828-124730160:+
Coord C1 exon
chr5:124726828-124726908
Coord A exon
chr5:124729063-124729163
Coord C2 exon
chr5:124730052-124730160
Length
101 bp
Sequences
Splice sites
3' ss Seq
CAATGCATTGTGTTTTGCAGTCA
3' ss Score
6.54
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
Exon sequences
Seq C1 exon
ACATTCCCTTGGTCTTTGATGAGGAGGGAGAGGAAGAGGAGAGTGACTATCAAAAAGTAGAGGCCACCGAAAAAATGTCAG
Seq A exon
TCAAGTTCTCAAAGCTGAGAAGTGACTCCATGACCCCCTCTCTATTTGATATGGATGACGAAGAGCCAGATGTAGAGACCTACAGCAAACTGTATGGCAAG
Seq C2 exon
AAAATTGTAAAACGCATCATCAACAAGCTGGAGCTGCGTGTGAACCTCGCCTCTCTTCCCGAGGAGTTTTTGCAACAGAATGTGGTTTTTTTCCTCAGAAGTTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.536 A=0.206 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTCCCTTGGTCTTTGATGAGG
R:
AAAACCACATTCTGTTGCAAAAACT
Band lengths:
170-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types