HsaEX6075907 @ hg19
Exon Skipping
Gene
ENSG00000140367 | UBE2Q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:HGNC Symbol;Acc:19248]
Coordinates
chr15:76171439-76182824:+
Coord C1 exon
chr15:76171439-76171529
Coord A exon
chr15:76175707-76175765
Coord C2 exon
chr15:76182776-76182824
Length
59 bp
Sequences
Splice sites
3' ss Seq
CTTGCTTATTTGCTTTTTAGGAT
3' ss Score
11.11
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GGTTGACCCTGATAGTCCTTTGCACAGTGATCTTCAGATCTTAAAAGAAAAAGAAGGCATAGAATATATTTTGCTTAACTTCTCTTTTAAG
Seq A exon
GATAACTTTCCATTTGATCCTCCATTTGTTCGAGTGGTGTTACCTGTTCTCTCAGGAGG
Seq C2 exon
GTATGTATTGGGTGGAGGAGCATTATGTATGGAACTTCTCACAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140367-'11-17,'11-14,14-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(19.2=100)
A:
PF0017921=UQ_con=FE(12.2=100)
C2:
PF0017921=UQ_con=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGACCCTGATAGTCCTTTGC
R:
TGAGAAGTTCCATACATAATGCTCCT
Band lengths:
132-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)