BtaEX0038826 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004024 | UBE2Q2
Description
Bos taurus ubiquitin-conjugating enzyme E2Q family member 2 (UBE2Q2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075530]
Coordinates
chr21:31680141-31704192:+
Coord C1 exon
chr21:31680141-31680231
Coord A exon
chr21:31690290-31690348
Coord C2 exon
chr21:31704144-31704192
Length
59 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTATTTGTTTTTTAGGAT
3' ss Score
12.46
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GGTGGATCCTGATAGTCCTTTGCACAGTGATCTTCAGATTTTAAAAGAAAAAGAAGGCATAGAATATATTTTGCTTAACTTCTCTTTTAAG
Seq A exon
GATAACTTTCCATTTGATCCTCCATTTGTTCGAGTGGTATTACCTGTTCTCTCAGGAGG
Seq C2 exon
GTACGTGTTGGGTGGTGGAGCACTGTGCATGGAACTACTCACAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004024_MULTIEX1-9/12=8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(19.2=100)
A:
PF0017921=UQ_con=FE(12.2=100)
C2:
PF0017921=UQ_con=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGATCCTGATAGTCCTTTGC
R:
TGAGTAGTTCCATGCACAGTGC
Band lengths:
132-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development