RnoEX6035867 @ rn6
Exon Skipping
Gene
ENSRNOG00000014529 | Ube2q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:MGI Symbol;Acc:MGI:2388672]
Coordinates
chr8:59745287-59753464:+
Coord C1 exon
chr8:59745287-59745377
Coord A exon
chr8:59750384-59750442
Coord C2 exon
chr8:59753420-59753464
Length
59 bp
Sequences
Splice sites
3' ss Seq
TGATTAAACTTTTTTTTTAGGAT
3' ss Score
9.92
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GGTTGACTCTGATAGTCCTTTGCACAGTGATCTTCAGATCTTAAAAGAAAAAGAAGGCATAGAATATATTTTGCTTAACTTCTCTTTTAAG
Seq A exon
GATAATTTCCCATTTGATCCCCCGTTTGTTCGAGTGGTGTTACCTGTTCTCTCAGGAGG
Seq C2 exon
GTACGTGTTGGGCGGGGCCACTGTTTTTCCTGTCACTATGGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014529-'27-19,'27-18,28-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(19.4=100)
A:
PF0017921=UQ_con=FE(12.3=100)
C2:
PF0017921=UQ_con=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGATAGTCCTTTGCACAGTG
R:
TAGTGACAGGAAAAACAGTGGCC
Band lengths:
124-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]