GgaEX6007410 @ galGal3
Exon Skipping
Gene
ENSGALG00000002989 | UBE2Q2
Description
NA
Coordinates
chr10:4444278-4446080:-
Coord C1 exon
chr10:4445990-4446080
Coord A exon
chr10:4445607-4445665
Coord C2 exon
chr10:4444278-4444326
Length
59 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTTTATGTATTTCAGGAT
3' ss Score
10.04
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
GGTTGATCCTGACAGCCCTCTGCATAGTGATCTTCAGGTCTTAAAAGAAAAAGAAGGTGTAGAATACATTTTACTCAACTTCTCTTTTAAG
Seq A exon
GATAACTTCCCGTTTGATCCTCCCTTTGTGCGAGTAGTATCTCCTGTGCTCACAGGAGG
Seq C2 exon
ATATGTCCTAGGTGGAGGTGCATTATGCATGGAACTTCTTACCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002989-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(19.2=100)
A:
PF0017921=UQ_con=FE(12.2=100)
C2:
PF0017921=UQ_con=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGACAGCCCTCTGCATA
R:
TGTTTGGTAAGAAGTTCCATGCA
Band lengths:
134-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]