HsaEX6077036 @ hg19
Exon Skipping
Gene
ENSG00000101224 | CDC25B
Description
cell division cycle 25 homolog B (S. pombe) [Source:HGNC Symbol;Acc:1726]
Coordinates
chr20:3776386-3779110:+
Coord C1 exon
chr20:3776386-3776526
Coord A exon
chr20:3778269-3778396
Coord C2 exon
chr20:3779059-3779110
Length
128 bp
Sequences
Splice sites
3' ss Seq
GGTCCCTGTTCCCTTCCCAGCGA
3' ss Score
8.19
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TTGCTGCTGCTCAGCGCAGCCAGTCGCGGAGGCGGGGAGGCTGCGCGGTCAGAGGCGCCTGGAGCGAGCGAATCCTGGCCCACCGCCTGCCCAACCGCGTGACCTTGATTGAGTTAATGAACTTCACGCCTCAGCGTCCAG
Seq A exon
CGAAACCCCAAAGAGTCAGGTAGGGACCCTGCTCTTCCGCAGCCGCAGCCGCCTGACGCACCTATCCCTGTCTCGACGGGCATCCGAATCCTCCCTGTCGTCTGAATCCTCCGAATCTTCTGATGCAG
Seq C2 exon
GTCTCTGCATGGATTCCCCCAGCCCTATGGACCCCCACATGGCGGAGCAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101224-'0-5,'0-3,2-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.754 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF066178=M-inducer_phosp=PU(33.3=77.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAGAGGCGCCTGGAG
R:
GTCTGCTCCGCCATGTGG
Band lengths:
147-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)