RnoEX0018906 @ rn6
Exon Skipping
Gene
ENSRNOG00000021248 | Cdc25b
Description
cell division cycle 25B [Source:RGD Symbol;Acc:621500]
Coordinates
chr3:123731539-123733516:+
Coord C1 exon
chr3:123731539-123731971
Coord A exon
chr3:123732715-123732836
Coord C2 exon
chr3:123733465-123733516
Length
122 bp
Sequences
Splice sites
3' ss Seq
GCCTCTTTCTCCTTTCCTAGCGA
3' ss Score
9.53
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTATTTTTCGAATATATAAGGAGGTGGAGGTGGCAGCTGCCCAGCTCGCGTCTTCCCCTCCCTTCCTCCCCACATCCCTCTCCTCACTCCCAGGCCCACTGCTCTTCCTCCCTCCCTCCCCTCCCTCCTTCCCCTTACCCCAGGCTCACTCTCGGAGCCTAGCCATCTGGGTCGGCGTCTGCTGGCCGCTGTACTTGTGGCCCTCTAGCTAGCCTTTGCCCGCCCCGCCACCATGGAGGTACCCCCGCAGAAGTCTGCGCCGGGCTCAGCTCTCAGTACTGCCCGCGTGCTGGGTGGCATTCAGCGGCCGCGCCACCTCTCAGGCTTTGGGTTTGGGTCTGATGGCTTGCTGGGGTCTCCAGAGCGTGCGGCTTCCTCCTCTCCGGTTACCACTCTTACCCAGACCATGTACAACCTCGCAGGGCTCGGCAG
Seq A exon
CGAGACCCCAAAAACTCAAGTAGGAAGCCTGTCGTTCCAGAACAGGCTGACAGACCTGTCCCTGTCCAGACGTACCTCTGAGTGCTCCCTGTCATCTGAGTCCTCAGAATCTTCTGATGCAG
Seq C2 exon
GTCTCTGCATGGACTCCCCTAGCCCTATGGACCCACAGACAGCAGAGCGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021248-'1-4,'1-2,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.791 A=0.690 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF066178=M-inducer_phosp=PU(5.2=77.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCCTCTAGCTAGCCTTTG
R:
TAGGGGAGTCCATGCAGAGAC
Band lengths:
256-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]